rs28649027 chr1:1724489 G>C
- Sequence
caggactccaaaagaaactgcgcc[G/C]tgagctgcacttccgacttcggcg
- ASB in cell types
- HepG2 (hepatoblastoma) renal cortex foreskin keratinocyte GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- TYY1_HUMAN RBM25_HUMAN ZFX_HUMAN IKZF2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | -5.59 | 2.91 | 2.00 | n/a | No Hit | |||
| RBM25_HUMAN | -0.46 | 1.68 | 2.00 | n/a | n/a | |||
| ZFX_HUMAN | 1.69 | -0.12 | 1.00 | n/a | No Hit | |||
| IKZF2_HUMAN | 1.35 | -0.86 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Vagina, Whole_Blood