rs28972793 chr10:38529676 A>T
- Sequence
ggaaaagaatgtaatggcgtggaa[A/T]caaatggaatggagttgaatggaa
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) HeLa S3 (cervical adenocarcinoma) HepG2 (hepatoblastoma) iPSC derived cardiomyocytes
- ASB for transcription factors
- CENPA_HUMAN LMNA_HUMAN SMHD1_HUMAN SOX6_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CENPA_HUMAN | 0.46 | 2.83 | 3.00 | n/a | n/a | |||
| LMNA_HUMAN | n/a | 2.51 | 2.50 | n/a | n/a | |||
| SMHD1_HUMAN | -2.75 | 2.67 | 1.00 | n/a | n/a | |||
| SOX6_HUMAN | n/a | 3.21 | 1.00 | -4.75 | Discordant | |||
| FOXP1_HUMAN | n/a | 3.35 | 2.00 | -1.87 | Weak Discordant |
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Motif analysis
