rs290436 chr20:54062953 C>G
- Sequence
ttactgccatctattggctgatgt[C/G]aatattagcagaaatgaattcagc
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) transverse colon LoVo (colorectal adenocarcinoma)
- ASB for transcription factors
- STAG1_HUMAN IKZF2_HUMAN RELB_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | -0.22 | 0.48 | 1.14 | n/a | n/a | |||
| IKZF2_HUMAN | 2.63 | n/a | 1.50 | n/a | n/a | |||
| RELB_HUMAN | 2.56 | n/a | 1.00 | n/a | No Hit | |||
| CTCF_HUMAN | 0.63 | 1.10 | 1.45 | n/a | No Hit |
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