ADASTRA v6.1.0
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rs290990
chr9:90799413
C
>
T
Sequence
aataaacttagtaaataaagccag[C/T]gtaaacatttgtgtgcagattttt
ASB in cell types
MCF7 TamR (invasive ductal breast carcinoma Tamoxifen resistant)
MCF7 (Invasive ductal breast carcinoma)
22RV1 (prostate carcinoma)
ASB for transcription factors
FOXA1_HUMAN
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View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
C
) ASB
-log10 FDR of Alt (
T
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN
-0.16
1.63
1.00
1.1·10
-12
1.75
5.63
Concordant
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5
1 – 1 of 1
Motif analysis
FOXA1_HUMAN
Concordant
Show reverse complement
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Genetic associations
GRASP
hdl cholesterol
,
ldl cholesterol
GTEx eQTL
Adipose_Subcutaneous
,
Esophagus_Muscularis
,
Nerve_Tibial
,
Skin_Not_Sun_Exposed_Suprapubic
,
Skin_Sun_Exposed_Lower_leg
,
Stomach
,
Testis
,
Thyroid
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Generated by ADASTRA database
2024.11.16 v6.1.0 Mabel
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)
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