rs2911592 chr1:84574386 G>A
- Sequence
gccgctcggcgggctagagacgag[G/A]cgccagcgtcgaagctgcggccgg
- ASB in cell types
- MOLT-4 (Adult T acute lymphoblastic leukemia) CD14+ monocytes HeLa (cervical adenocarcinoma) tibial nerve
- ASB for transcription factors
- CTCF_HUMAN ZN444_HUMAN STAT1_HUMAN INT11_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.48 | 0.61 | 1.15 | n/a | No Hit | |||
| ZN444_HUMAN | 3.47 | n/a | 2.00 | n/a | No Hit | |||
| STAT1_HUMAN | 2.14 | -1.08 | 2.00 | n/a | No Hit | |||
| INT11_HUMAN | -1.45 | 1.11 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Vagina