rs292101 chr11:86371360 G>A

Sequence
ttttctgacccagcattctgatgg[G/A]ttagctggcacattccagacagaa
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
EMSY_HUMAN MAFG_HUMAN TIF1A_HUMAN KDM1A_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
EMSY_HUMAN n/a 1.50 1.003.1·10-5 2.00 n/a n/a
MAFG_HUMAN n/a 1.87 1.003.0·10-3 2.00 n/a No Hit
TIF1A_HUMAN -4.03 2.19 1.003.4·10-3 1.67 n/a n/a
KDM1A_HUMAN -1.67 2.54 1.005.0·10-3 2.00 n/a n/a
ATF3_HUMAN -1.17 1.89 1.000.02 2.00 n/a No Hit
Items per page:
1 – 5 of 6

Motif analysis

No data available

Genetic associations

GRASP 2 hour glucose,  advanced age-related macular degeneration (choroidal neovascularization) vs. no amd,  systolic blood pressure (sbp),  total cholesterol,  urinary albumin-to-creatinine ratio
GTEx eQTL Cells_Cultured_fibroblasts,  Muscle_Skeletal,  Testis

Download