ADASTRA v6.1.0
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rs293000
chr5:58738456
T
>
C
Sequence
tgtaactcaggaaatagcaaatag[T/C]tcgaaacacatgttagcagttaat
ASB in cell types
HepG2 (hepatoblastoma)
ASB for transcription factors
FOXA2_HUMAN
P66A_HUMAN
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View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
T
) ASB
-log10 FDR of Alt (
C
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA2_HUMAN
-3.52
2.47
1.00
5.1·10
-5
1.50
-2.49
Discordant
P66A_HUMAN
n/a
2.59
1.00
0.04
1.00
n/a
n/a
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5
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Motif analysis
FOXA2_HUMAN
Discordant
Show reverse complement
Show rev. comp.
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Genetic associations
GTEx eQTL
Esophagus_Muscularis
,
Lung
,
Pancreas
,
Skin_Not_Sun_Exposed_Suprapubic
,
Skin_Sun_Exposed_Lower_leg
,
Stomach
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Generated by ADASTRA database
2024.11.16 v6.1.0 Mabel
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)
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