rs293000 chr5:58738456 T>C
- Sequence
tgtaactcaggaaatagcaaatag[T/C]tcgaaacacatgttagcagttaat
- ASB in cell types
- HepG2 (hepatoblastoma)
- ASB for transcription factors
- FOXA2_HUMAN P66A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA2_HUMAN | -3.52 | 2.47 | 1.50 | -2.49 | Discordant | |||
| P66A_HUMAN | n/a | 2.59 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Esophagus_Muscularis, Lung, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach