rs293369 chr15:89087901 C>A
- Sequence
ccttcgggttcggtgactcacgac[C/A]cttcttcctctctcccgggatatg
- ASB in cell types
- HEK293 (embryonic kidney) MCF7 (Invasive ductal breast carcinoma) monocytes from periferal blood A549 (lung carcinoma)
- ASB for transcription factors
- CLOCK_HUMAN SRBP2_HUMAN ZN217_HUMAN CDK8_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CLOCK_HUMAN | -1.28 | 2.13 | 1.00 | n/a | No Hit | |||
| SRBP2_HUMAN | 1.38 | -0.67 | 2.33 | 1.39 | Weak Discordant | |||
| ZN217_HUMAN | -0.54 | 2.16 | 1.00 | n/a | n/a | |||
| CDK8_HUMAN | 1.32 | -0.11 | 1.80 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid