rs293540 chr20:32485365 G>A
- Sequence
gtaaacaaggctccctctacagcc[G/A]cgagtgcgaagtacaaccccacag
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) HepG2 (hepatoblastoma) 22RV1 (prostate carcinoma) neutrophils from periferal blood
- ASB for transcription factors
- FOXK2_HUMAN ANDR_HUMAN TBX21_HUMAN KDM6A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 3.13 | -0.55 | 1.25 | n/a | No Hit | |||
| ANDR_HUMAN | 3.16 | 0.11 | 1.44 | n/a | No Hit | |||
| TBX21_HUMAN | 0.33 | 2.41 | 1.00 | n/a | No Hit | |||
| KDM6A_HUMAN | 2.50 | n/a | 3.00 | n/a | n/a | |||
| MNT_HUMAN | -0.56 | 2.01 | 1.00 | 3.24 | Concordant |
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Motif analysis
