rs296890 chr9:83980816 C>A

Sequence
gaggtaaaaaaggaactgggagcg[C/A]gccgcggcggttcctgtccttaca
ASB in cell types
MDM(monocyte derived macrophages) MOLM14 (Adult acute myeloid leukemia) LNCaP (prostate carcinoma) CD14+ monocytes
ASB for transcription factors
BRD4_HUMAN RAD21_HUMAN STAT1_HUMAN CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
BRD4_HUMAN 1.59 0.37 2.3·10-51.00 1.04 n/a n/a
RAD21_HUMAN 2.46 -0.14 2.1·10-31.00 1.25 n/a n/a
STAT1_HUMAN 1.81 0.40 2.2·10-31.00 2.33 1.51 Weak Discordant
CTCF_HUMAN 0.98 0.27 4.8·10-31.00 1.15 n/a No Hit
E2F1_HUMAN 1.10 0.04 7.6·10-31.00 1.11 n/a No Hit
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Motif analysis

STAT1_HUMAN Weak Discordant
STAT1_HUMAN pic

Genetic associations

GRASP coronary artery disease (cad)
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Spinal_cord_cervical_c-1,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Esophagus_Mucosa,  Esophagus_Muscularis,  Liver,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Testis,  Thyroid,  Whole_Blood

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