ADASTRA v6.1.0
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rs297186
chr5:17189610
A
>
C
Sequence
tggatgagcgccacctagtggccg[A/C]agtttaacttgaggacaactgcaa
ASB in cell types
THP-1 (acute monocytic leukemia)
GM19099 (female B-cells Lymphoblastoid Cell Lines)
epidermal keratinocytes
ASB for transcription factors
RAD21_HUMAN
STAG1_HUMAN
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View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
A
) ASB
-log10 FDR of Alt (
C
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RAD21_HUMAN
0.05
1.74
1.00
4.5·10
-7
1.59
n/a
n/a
STAG1_HUMAN
1.62
0.37
3.6·10
-3
1.00
1.14
n/a
n/a
Items per page:
5
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GRASP
advanced age-related macular degeneration
,
advanced age-related macular degeneration (choroidal neovascularization) vs. no amd
,
ldl cholesterol
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Generated by ADASTRA database
2024.11.16 v6.1.0 Mabel
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)