rs297220 chr5:17132807 A>G

Sequence
cctcactcaaactgatttttacca[A/G]tgttttaccattaggaaaaatata
ASB in cell types
THP-1 (acute monocytic leukemia)
ASB for transcription factors
RAD21_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RAD21_HUMAN 0.03 1.50 1.000.02 1.44 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP fasting blood glucose,  fasting insulin,  homa-ir,  mitral annular calcium,  serum creatinine
GTEx eQTL Brain_Amygdala,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Hippocampus,  Brain_Hypothalamus,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Substantia_nigra,  Whole_Blood

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