rs2974929 chr1:155227477 T>C
- Sequence
gggcgggactggagaatggggccc[T/C]gcgcactaggcgcggaagtcaaga
- ASB in cell types
- HepG2 (hepatoblastoma) HeLa (cervical adenocarcinoma) HeLa S3 (cervical adenocarcinoma) HeLa-LTR-Luciferase cells
- ASB for transcription factors
- NRF1_HUMAN PKNX1_HUMAN INT11_HUMAN NELFA_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NRF1_HUMAN | 2.30 | -0.32 | 1.52 | -2.47 | Concordant | |||
| PKNX1_HUMAN | 1.20 | -1.23 | 1.50 | n/a | No Hit | |||
| INT11_HUMAN | -0.40 | 1.54 | 1.69 | n/a | n/a | |||
| NELFA_HUMAN | n/a | 3.31 | 2.00 | n/a | n/a | |||
| TBX21_HUMAN | 1.52 | -1.10 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Putamen_basal_ganglia, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Vagina, Whole_Blood