rs2977230 chr1:17250823 T>C
- Sequence
cagatgtgtctccggtttgacctg[T/C]cccaggaagcctgggcctggctcc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) primary endothelial colony-forming cells MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) ME-1 (acute myeloid leukemia )
- ASB for transcription factors
- ESR1_HUMAN TAL1_HUMAN MNT_HUMAN GATA2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 0.28 | 1.98 | 1.88 | 0.47 | Weak Concordant | |||
| TAL1_HUMAN | -2.92 | 1.72 | 1.50 | n/a | No Hit | |||
| MNT_HUMAN | -4.79 | 2.70 | 2.00 | n/a | No Hit | |||
| GATA2_HUMAN | -0.68 | 1.60 | 1.00 | n/a | No Hit | |||
| NFIB_HUMAN | -0.08 | 1.51 | 2.00 | n/a | No Hit |
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Motif analysis
