rs3009956 chr1:234781372 G>A
- Sequence
acaatcctgaattcctggactctg[G/A]gctggtgtttgtattttccagcta
- ASB in cell types
- HepG2 (hepatoblastoma) HEK293 (embryonic kidney) HEK293T (embryonic kidney) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- CTCF_HUMAN TEAD3_HUMAN FOXA2_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.57 | 1.69 | 1.30 | n/a | No Hit | |||
| TEAD3_HUMAN | -3.23 | 3.54 | 1.00 | 0.51 | Weak Concordant | |||
| FOXA2_HUMAN | -4.13 | 2.87 | 1.33 | n/a | No Hit | |||
| ANDR_HUMAN | -1.37 | 2.63 | 2.00 | 0.13 | Weak Concordant | |||
| HTF4_HUMAN | n/a | 2.67 | 1.00 | 0.28 | Weak Concordant |
Items per page:
1 – 5 of 11
Motif analysis
