rs30177 chr5:132866719 C>G

Sequence
agtggggtctggttgtgcagtgtt[C/G]gtggaccctgggaggctaggggcg
ASB in cell types
K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
GABPA_HUMAN CTCF_HUMAN RFOX2_HUMAN SPT5H_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GABPA_HUMAN 1.38 -0.36 9.4·10-41.00 1.57 n/a No Hit
CTCF_HUMAN 0.48 0.81 0.942.6·10-3 1.11 n/a No Hit
RFOX2_HUMAN 1.53 -3.63 0.031.00 2.00 n/a n/a
SPT5H_HUMAN -0.09 1.90 1.000.04 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP adiponectin levels,  fasting blood glucose,  infant head circumference,  triglycerides
GTEx eQTL Adipose_Subcutaneous,  Adrenal_Gland,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Hippocampus,  Brain_Putamen_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Thyroid,  Whole_Blood

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