rs302626 chr6:39792176 T>C
- Sequence
tcattgtacgcctcgccctgccgg[T/C]ggcgctctccccccgcctgcgttc
- ASB in cell types
- GM19238 (female B-cells lymphoblastoid cell lines) GM19099 (female B-cells Lymphoblastoid Cell Lines) GM18951 (B-cells Lymphoblastoid Cell Lines) Kelly (neuroblastoma)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.38 | 0.14 | 1.22 | -1.38 | Weak Concordant | |||
| STAG1_HUMAN | 1.84 | -1.74 | 1.30 | n/a | n/a |
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Motif analysis
