rs30381 chr5:179870871 G>A
- Sequence
ctggctcaactgttgtgacgctag[G/A]gccacagcgcagcagccaccttga
- ASB in cell types
- PANC1 (pancreatic ductal adenocarcinoma) HCT-116 (colon carcinoma) bipolar neuron
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.54 | -0.92 | 1.47 | n/a | No Hit | |||
| RAD21_HUMAN | 2.68 | -0.14 | 1.25 | n/a | n/a |
Items per page:
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Amygdala, Brain_Hypothalamus, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood