ADASTRA v6.1.0
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rs3088322
chr1:167789664
A
>
G
Sequence
gtaacgctccaccttacatgccac[A/G]tctgtgtgagtcaacagggatcag
ASB in cell types
PC3(bone mets prostate adenocarcinoma)
ASB for transcription factors
PBX4_HUMAN
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View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
A
) ASB
-log10 FDR of Alt (
G
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
PBX4_HUMAN
-3.08
2.96
1.00
4.1·10
-3
1.00
n/a
n/a
Items per page:
5
1 – 1 of 1
Motif analysis
No data available
Genetic associations
GRASP
advanced age-related macular degeneration (geographic atrophy)
,
ldl cholesterol
GTEx eQTL
Esophagus_Mucosa
,
Skin_Sun_Exposed_Lower_leg
,
Thyroid
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Generated by ADASTRA database
2024.11.16 v6.1.0 Mabel
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)