rs3092281 chr20:48864433 G>A
- Sequence
aatcacagctaatatttattgtgt[G/A]ctttctttgtgccaaatgttgttc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) MCF7 WS8 cells MCF7 TamR (invasive ductal breast carcinoma Tamoxifen resistant) breast tumor
- ASB for transcription factors
- ESR1_HUMAN FOXA1_HUMAN ARI1A_HUMAN TRPS1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 0.97 | 2.15 | 3.87 | n/a | No Hit | |||
| FOXA1_HUMAN | 1.40 | 2.16 | 3.21 | 1.80 | Weak Concordant | |||
| ARI1A_HUMAN | n/a | 2.90 | 3.00 | n/a | No Hit | |||
| TRPS1_HUMAN | n/a | 3.04 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid