rs309297 chr2:7047685 C>T
- Sequence
tggttcagctacaaaaaagcctta[C/T]gcttgaactggaggtgtagacagt
- ASB in cell types
- HT1080 (fibrosarcoma)
- ASB for transcription factors
- SSRP1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SSRP1_HUMAN | 2.67 | -2.54 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP birth weight, irritible bowel syndrome, mitral annular calcium, obesity with early age of onset (age >2), triglycerides
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Brain_Caudate_basal_ganglia, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts