rs3116415 chr1:84410545 A>T
- Sequence
ccaattccaatttagcaaatttgc[A/T]ttctgccaaaacaaattttccttg
- ASB in cell types
- LNCaP (prostate carcinoma) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN A2NVP9_HUMAN NCOA3_HUMAN TBP_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 0.03 | 1.14 | 1.57 | n/a | No Hit | |||
| A2NVP9_HUMAN | -0.47 | 2.69 | 1.50 | n/a | n/a | |||
| NCOA3_HUMAN | 1.03 | 3.08 | 1.50 | n/a | n/a | |||
| TBP_HUMAN | -0.88 | 1.72 | 1.00 | n/a | No Hit |
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