rs3202848 chr17:8173337 C>T
- Sequence
caagactgcaaaatagacaaacag[C/T]aatagcaagactgcaaaatagaca
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) HEK293T (embryonic kidney) GM12878 (female B-cells lymphoblastoid cell line) A549 (lung carcinoma)
- ASB for transcription factors
- IRF5_HUMAN JUN_HUMAN ZN785_HUMAN TADBP_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IRF5_HUMAN | n/a | 2.92 | 1.00 | -0.60 | Weak Discordant | |||
| JUN_HUMAN | 1.22 | -0.69 | 2.81 | n/a | No Hit | |||
| ZN785_HUMAN | 2.49 | -2.14 | 1.00 | n/a | n/a | |||
| TADBP_HUMAN | 1.66 | -0.88 | 1.50 | n/a | n/a |
Items per page:
1 – 4 of 4
Motif analysis
