rs321600 chr17:35578449 A>G
- Sequence
cgtgccactgtgagcccgggacac[A/G]agggctgactccagctgttggctt
- ASB in cell types
- K562 (myelogenous leukemia) HCASMC (Human coronary artery smooth muscle cells) HL-60 (acute myeloid leukemia) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- TCF21_HUMAN ESR1_HUMAN INT13_HUMAN NRF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TCF21_HUMAN | n/a | 3.22 | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | -2.21 | 3.00 | 2.00 | n/a | No Hit | |||
| INT13_HUMAN | 1.84 | -0.19 | 1.00 | n/a | n/a | |||
| NRF1_HUMAN | -0.58 | 2.00 | 2.00 | n/a | No Hit | |||
| RBBP5_HUMAN | -4.59 | 2.07 | 2.00 | n/a | n/a |
Items per page:
1 – 5 of 5