rs322380 chr5:172772589 T>C
- Sequence
gaggggatttcgctggccaccctg[T/C]gtcgtcgctgtgcgagctgtatca
- ASB in cell types
- K562 (myelogenous leukemia) A549 (lung carcinoma) thymus-derived CD34- cells macrophages
- ASB for transcription factors
- CEBPB_HUMAN TF65_HUMAN BC11B_HUMAN JUNB_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CEBPB_HUMAN | 0.60 | 1.44 | 1.65 | n/a | No Hit | |||
| TF65_HUMAN | 0.50 | 2.69 | 2.30 | n/a | No Hit | |||
| BC11B_HUMAN | n/a | 3.19 | 2.00 | n/a | n/a | |||
| JUNB_HUMAN | -0.38 | 1.80 | 2.12 | n/a | No Hit | |||
| JUN_HUMAN | 0.23 | 0.85 | 2.00 | n/a | No Hit |
Items per page:
1 – 5 of 6