rs322958 chr17:3557942 T>C
- Sequence
ccccacacccacacagcagcctca[T/C]ccccaccggagaaaaggcagggga
- ASB in cell types
- HCT-116 (colon carcinoma) MCF7 (Invasive ductal breast carcinoma) HCASMC (Human coronary artery smooth muscle cells)
- ASB for transcription factors
- TCF21_HUMAN USF1_HUMAN EGR1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TCF21_HUMAN | 1.63 | -2.67 | 6.00 | n/a | No Hit | |||
| USF1_HUMAN | 1.82 | 0.38 | 1.33 | n/a | No Hit | |||
| EGR1_HUMAN | 2.55 | 0.26 | 1.25 | 3.18 | Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Liver, Lung, Muscle_Skeletal, Pituitary, Skin_Sun_Exposed_Lower_leg, Thyroid