rs324398 chr7:34748564 G>C
- Sequence
ttcctctctgcatgccatacaacc[G/C]ggaattcctacattactgagtcac
- ASB in cell types
- TTC-1240 (Rhabdoid tumor of the kidney) HEK293 (embryonic kidney) GM12878 (female B-cells lymphoblastoid cell line) A-673 clone Asp114 (Ewing sarcoma)
- ASB for transcription factors
- CTCF_HUMAN NFXL1_HUMAN FLI1_HUMAN SMCA4_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -5.32 | 2.77 | 1.50 | n/a | No Hit | |||
| NFXL1_HUMAN | n/a | 2.67 | 1.00 | n/a | n/a | |||
| FLI1_HUMAN | 2.51 | -2.35 | 1.00 | -1.76 | Weak Concordant | |||
| SMCA4_HUMAN | 0.03 | 1.46 | 1.50 | n/a | n/a |
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Motif analysis
