rs326052 chr5:1004764 T>C
- Sequence
aggagcgcgcgggggcgctcttgc[T/C]cccaaggccgcacgagcgccaagg
- ASB in cell types
- LNCaP C4-2B (prostate carcinoma) HEK293 (embryonic kidney) GM12892 (female B-cells lymphoblastoid cell line) GM18505 (female B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- ZFX_HUMAN TYY1_HUMAN SMCA5_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZFX_HUMAN | 1.86 | -0.15 | 1.83 | n/a | No Hit | |||
| TYY1_HUMAN | 1.84 | -0.97 | 1.75 | n/a | No Hit | |||
| SMCA5_HUMAN | 2.41 | -2.11 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Brain_Anterior_cingulate_cortex_BA24, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood