rs326614 chr5:134289731 G>T
- Sequence
ggactgtgggctccctctggagga[G/T]actatgataatctgacttcgaaga
- ASB in cell types
- foreskin keratinocyte transverse colon testis HMEC (human mammary epithelial cells)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.86 | 0.36 | 1.28 | -0.40 | Weak Concordant |
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Motif analysis
Genetic associations
GRASP bipolar disorder, chronic kidney disease, fasting insulin, hdl cholesterol, homa-b, homa-ir, irritible bowel syndrome, major depressive disorder, refractive error, total cholesterol
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Hypothalamus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood