rs327992 chr9:105297021 C>T

Sequence
agagaaccagtccttcatctctta[C/T]gccacaatgctacattcctctggg
ASB in cell types
SUM159PT (Triple negative breast cancer)
ASB for transcription factors
CEBPB_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CEBPB_HUMAN 1.44 -0.85 4.0·10-31.00 1.33 -1.40 Weak Concordant
Items per page:
1 – 1 of 1

Motif analysis

CEBPB_HUMAN Weak Concordant
CEBPB_HUMAN pic

Genetic associations

GRASP hdl cholesterol,  homa-b,  obesity with early age of onset (age >2)
GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Tibial,  Brain_Nucleus_accumbens_basal_ganglia,  Heart_Atrial_Appendage,  Lung,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis

Download