rs329255 chr7:35025915 A>C

Sequence
tgtggaaggttgagaagcactgac[A/C]ttggtcaacagagaaaccaagcaa
ASB in cell types
MCF7 (Invasive ductal breast carcinoma) breast tumor
ASB for transcription factors
ESR1_HUMAN PRGR_HUMAN ARI1A_HUMAN AHRR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN 0.38 2.08 1.001.6·10-58 2.52 4.84 Concordant
PRGR_HUMAN -0.96 1.93 0.986.3·10-3 2.00 n/a No Hit
ARI1A_HUMAN -0.14 1.66 1.000.01 2.00 n/a No Hit
AHRR_HUMAN -1.83 2.78 1.000.02 2.00 n/a No Hit
FOXA1_HUMAN 0.30 1.20 1.000.02 2.36 1.02 Weak Concordant
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Motif analysis

ESR1_HUMAN Concordant
ESR1_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Frontal_Cortex_BA9,  Lung,  Muscle_Skeletal,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Whole_Blood

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