rs33048 chr16:28121630 T>C

Sequence
attatttggagattgggggcaagg[T/C]ctttcctaaaaatgcacaaacatc
ASB in cell types
liver
ASB for transcription factors
HNF4A_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
HNF4A_HUMAN 2.42 -4.42 0.011.00 1.50 -3.64 Concordant
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Motif analysis

HNF4A_HUMAN Concordant
HNF4A_HUMAN pic

Genetic associations

GRASP college completion,  hdl cholesterol change with statins,  homa-ir,  years of education
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Breast_Mammary_Tissue,  Colon_Transverse,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Thyroid,  Whole_Blood

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