rs332262 chr15:64090698 C>T
- Sequence
agcagtttcagtagagagtgcgtg[C/T]gctgaagccagcttgcaaaagggg
- ASB in cell types
- GM01310 ( Transformed lymphovlasoid cell line ) GM12878 (female B-cells lymphoblastoid cell line) MS-1 (Small cell lung carcinoma) CD14+ monocytes
- ASB for transcription factors
- AHR_HUMAN FOXK2_HUMAN STAT1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| AHR_HUMAN | 2.23 | -1.14 | 1.50 | -3.66 | Concordant | |||
| FOXK2_HUMAN | 2.24 | -2.06 | 1.00 | n/a | No Hit | |||
| STAT1_HUMAN | 1.18 | -3.69 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adrenal_Gland, Artery_Aorta, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Lung, Minor_Salivary_Gland, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Spleen, Thyroid, Whole_Blood