rs332425 chr19:6801942 C>A
- Sequence
tgggtgctgatttgcatatgggca[C/A]gatgccagcacagtgggtgcccgc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) primary B-CLL cells CTV-1 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- SMCA4_HUMAN SPI1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMCA4_HUMAN | 1.55 | 0.82 | 1.08 | n/a | n/a | |||
| SPI1_HUMAN | 1.25 | 0.59 | 1.16 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP anti-tnf treatment response in rheumatoid arthritis (by das-28 score change at 3 months), college completion