rs333192 chr1:21750045 T>C

Sequence
tcttcagcctattctcagcaccca[T/C]agttatcccttaaaacagactgta
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
HDAC1_HUMAN ATF1_HUMAN NCOR1_HUMAN TAL1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
HDAC1_HUMAN 0.73 1.43 1.006.4·10-4 1.33 n/a n/a
ATF1_HUMAN -2.66 3.01 1.001.0·10-3 1.00 n/a No Hit
NCOR1_HUMAN -0.80 0.93 1.003.1·10-3 1.33 n/a n/a
TAL1_HUMAN -0.11 0.82 1.006.7·10-3 1.58 1.11 Weak Concordant
KDM1A_HUMAN -0.93 0.85 1.006.9·10-3 1.25 n/a n/a
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Motif analysis

TAL1_HUMAN Weak Concordant
TAL1_HUMAN pic

Genetic associations

GRASP adiponectin levels
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Nerve_Tibial,  Pancreas,  Skin_Sun_Exposed_Lower_leg,  Testis,  Whole_Blood

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