rs33556 chr5:112976831 T>C
- Sequence
gttggagtcgtctctgccgcggct[T/C]cctcggctgccagctctccggcga
- ASB in cell types
- LNCaP C4-2B (prostate carcinoma) monocyte-derived dendritic cells GM12878 (female B-cells lymphoblastoid cell line) Th1-cells
- ASB for transcription factors
- ZFX_HUMAN SPI1_HUMAN TBX21_HUMAN RFX5_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZFX_HUMAN | 2.14 | -2.06 | 1.00 | n/a | No Hit | |||
| SPI1_HUMAN | 1.41 | 0.21 | 1.82 | -3.96 | Concordant | |||
| TBX21_HUMAN | 0.47 | 2.31 | 1.00 | n/a | No Hit | |||
| RFX5_HUMAN | 2.77 | -5.29 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Aorta, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Muscle_Skeletal, Ovary, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Stomach, Testis, Whole_Blood