rs339060 chr7:128735549 A>G
- Sequence
ctcagagttctgcagctgtacagg[A/G]agcacagtggcttctgcttcttgg
- ASB in cell types
- CTV-1 (Adult T acute lymphoblastic leukemia) germinal center B-cells monocyte-derived dendritic cells
- ASB for transcription factors
- SPI1_HUMAN ETS1_HUMAN FLI1_HUMAN CBP_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 2.01 | 0.62 | 1.50 | -4.12 | Concordant | |||
| ETS1_HUMAN | 2.79 | -2.52 | 1.00 | -4.93 | Concordant | |||
| FLI1_HUMAN | 2.76 | -2.64 | 1.00 | -4.14 | Concordant | |||
| CBP_HUMAN | 2.04 | -1.12 | 2.00 | n/a | n/a | |||
| SMCA4_HUMAN | 1.86 | -0.99 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood