rs340138 chr19:6737470 T>C
- Sequence
gcgggcctcaccgtcagcgccagc[T/C]ggtggatgcgcccggagcagccac
- ASB in cell types
- GM02610 (Lymphoblastoid Cell Lines) neural cell MS-1 (Small cell lung carcinoma) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN ANDR_HUMAN STAG1_HUMAN BRD4_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.70 | 0.95 | 1.09 | -3.66 | Concordant | |||
| ANDR_HUMAN | -1.09 | 2.85 | 2.00 | n/a | No Hit | |||
| STAG1_HUMAN | 1.73 | 0.13 | 1.06 | n/a | n/a | |||
| BRD4_HUMAN | -0.19 | 1.98 | 2.50 | n/a | n/a | |||
| SMC3_HUMAN | 1.96 | -0.92 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid