rs3402 chr1:161165631 C>T

Sequence
cctggaggctcccttgtctcccag[C/T]cccatgtacaaagctcaccaagcc
ASB in cell types
22RV1 (prostate carcinoma)
ASB for transcription factors
ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 3.11 n/a 3.7·10-31.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP fasting insulin,  homa-b,  mitral annular calcium,  refractive error
GTEx eQTL Adipose_Subcutaneous,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Esophagus_Muscularis,  Muscle_Skeletal,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Whole_Blood

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