rs34050077 chr2:8543228 T>C
- Sequence
cctgcccccgcctctgaggggcac[T/C]gctcggcagccagcagcccacccc
- ASB in cell types
- MS-1 (Small cell lung carcinoma) GM19238 (female B-cells lymphoblastoid cell lines) GM19240 (B cells Lymphoblastoid Cell Lines) GM12891 (male B- cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.67 | -0.35 | 1.17 | -0.28 | Weak Concordant | |||
| STAG1_HUMAN | 1.50 | -0.19 | 1.17 | n/a | n/a | |||
| STAT1_HUMAN | n/a | 2.82 | 2.00 | n/a | No Hit |
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Motif analysis
