rs34097984 chr16:68790245 T>G

Sequence
tcaggcctgtcagctgccctttcc[T/G]gcacggggcatcagggagagagag
ASB in cell types
BEAS-2B (bronchial epithelium) BJ (fibroblasts) MCF7 (Invasive ductal breast carcinoma)
ASB for transcription factors
GCR_HUMAN P63_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GCR_HUMAN 0.48 0.87 1.000.01 1.09 n/a No Hit
P63_HUMAN 2.36 -2.38 0.021.00 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cortex,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Brain_Substantia_nigra,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Small_Intestine_Terminal_Ileum,  Spleen,  Testis,  Whole_Blood

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