rs34099486 chr1:205322025 G>A
- Sequence
ttggagctgcacttgcctctgagt[G/A]gcgcttggtcctgcttaatgccct
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) primary B-CLL cells
- ASB for transcription factors
- PKNX1_HUMAN IKZF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PKNX1_HUMAN | 2.24 | -2.06 | 1.00 | -3.76 | Concordant | |||
| IKZF2_HUMAN | 1.45 | -0.48 | 1.00 | n/a | n/a |
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Motif analysis
