rs34113003 chr6:53794436 C>T
- Sequence
accatgatcaccagagatgtgctc[C/T]caagttacaaagcctgcaggcggt
- ASB in cell types
- GM19099 (female B-cells Lymphoblastoid Cell Lines) foreskin keratinocyte 22RV1 (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN STAG2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 1.89 | -0.81 | 2.00 | n/a | No Hit | |||
| STAG2_HUMAN | -1.73 | 2.26 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid