rs34129074 chr6:161315472 G>C
- Sequence
aggtaataggaatgagtcaggatg[G/C]agcaggtaatccgaaggagtcagg
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- KDM1A_HUMAN MYBB_HUMAN BCOR_HUMAN HDAC2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| KDM1A_HUMAN | 2.87 | -0.87 | 1.00 | n/a | n/a | |||
| MYBB_HUMAN | 2.62 | n/a | 2.00 | n/a | No Hit | |||
| BCOR_HUMAN | 3.14 | -2.94 | 1.00 | n/a | n/a | |||
| HDAC2_HUMAN | 2.40 | -0.58 | 1.00 | n/a | n/a | |||
| MTA2_HUMAN | 2.70 | -1.37 | 1.00 | n/a | n/a |
Items per page:
1 – 5 of 14
Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Caudate_basal_ganglia, Brain_Hippocampus, Brain_Putamen_basal_ganglia, Esophagus_Mucosa