rs341329 chr5:112491652 T>A
- Sequence
ccaacaggaaagaaggatgagggc[T/A]ccccttaactagaccacagcatcc
- ASB in cell types
- VCaP (prostate carcinoma) bipolar neuron
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| VCaP (prostate carcinoma) | 2.66 | -1.87 | 2.00 | |||
| bipolar neuron | 1.73 | -1.44 | 1.00 |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Lung