rs34149442 chr15:79923834 G>T
- Sequence
cgtcgggcgctaagaagacctagc[G/T]cagagaggaccgccgagctcccga
- ASB in cell types
- HEK293 (embryonic kidney) HepG2 (hepatoblastoma) BJAB (Burkitt lymphoma) A549 (lung carcinoma)
- ASB for transcription factors
- RBM25_HUMAN TYY1_HUMAN SPT5H_HUMAN FOXK2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RBM25_HUMAN | 1.50 | -0.34 | 1.00 | n/a | n/a | |||
| TYY1_HUMAN | 1.17 | 0.07 | 1.31 | n/a | No Hit | |||
| SPT5H_HUMAN | 1.97 | -1.71 | 1.00 | n/a | n/a | |||
| FOXK2_HUMAN | 2.06 | n/a | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood