rs34154824 chr7:56065264 A>G

Sequence
acccccgcccccacgtactcggcc[A/G]gcttaaatagctgccagtttgtgg
ASB in cell types
monocytes from periferal blood gastroesophageal sphincter
ASB for transcription factors
SRBP2_HUMAN CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SRBP2_HUMAN 1.92 n/a 9.4·10-31.00 2.50 n/a No Hit
CTCF_HUMAN 0.66 1.42 1.000.03 1.03 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Visceral_Omentum,  Artery_Aorta,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Whole_Blood

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