rs34156340 chr12:107765529 A>C
- Sequence
aagtttgatacaattataatgtat[A/C]atgtaaggactgacctcctttatt
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) T47D (invasive ductal carcinoma) MCF7 WS8 cells LNCaP (prostate carcinoma)
- ASB for transcription factors
- ESR1_HUMAN FOXA1_HUMAN GATA3_HUMAN GRHL2_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 0.37 | 1.68 | 2.24 | n/a | No Hit | |||
| FOXA1_HUMAN | 1.27 | 1.45 | 1.91 | n/a | No Hit | |||
| GATA3_HUMAN | -0.52 | 1.98 | 2.83 | n/a | No Hit | |||
| GRHL2_HUMAN | -0.51 | 1.57 | 2.27 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Esophagus_Mucosa, Heart_Atrial_Appendage, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood