rs34169508 chr6:141483898 G>T
- Sequence
ttactgggagggtggagggtgatg[G/T]gcagtttcctgtcagttaattctg
- ASB in cell types
- germinal center B-cells MOLT-4 (Adult T acute lymphoblastic leukemia) CD14+ monocytes HUVEC-C (HUVEC, umbilical vein endothelial cells)
- ASB for transcription factors
- TF65_HUMAN STAT1_HUMAN CTCF_HUMAN CDK9_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TF65_HUMAN | 1.95 | -1.22 | 2.00 | -1.32 | Weak Concordant | |||
| STAT1_HUMAN | 2.63 | -0.23 | 1.50 | 0.28 | Weak Discordant | |||
| CTCF_HUMAN | 1.67 | 0.27 | 1.00 | n/a | No Hit | |||
| CDK9_HUMAN | n/a | 1.60 | 3.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Cells_Cultured_fibroblasts, Heart_Atrial_Appendage, Heart_Left_Ventricle, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Thyroid