rs341809 chr8:49129998 G>A

Sequence
agtctagtcgtatgacataattac[G/A]tcattgggaacttctggatttcaa
ASB in cell types
HepG2 (hepatoblastoma)
ASB for transcription factors
ATF2_HUMAN CREB1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ATF2_HUMAN 4.75 n/a 1.6·10-161.00 1.00 1.26 Weak Discordant
CREB1_HUMAN 2.81 -1.61 1.7·10-61.00 2.67 -5.25 Concordant
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Motif analysis

ATF2_HUMAN Weak Discordant
ATF2_HUMAN pic

Genetic associations

GRASP hdl cholesterol,  waist hip ratio,  years of education
GTEx eQTL Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Caudate_basal_ganglia,  Brain_Cerebellum,  Brain_Cortex,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Muscle_Skeletal,  Nerve_Tibial,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid

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